Landscape Genetics Map for Salmon in
Norton Sound, Yukon and Kuskokwim Rivers

US Fish and Wildlife Service Conservation Genetics Laboratory, Anchorage Alaska
Title: Chinook_Sites
Abstract: This layer is exported from LG_Chinook GIS layer from the Conservation Genetics Laboratory, US Fish and Wildlife Service, Anchorage, Alaska. The layer depicts landscape genetic population groups defined by genetic and geographic data using Spatial Analysis of Molecular Variance (SAMOVA, Dupanloup et al. 2002 Molecular Ecology 11:1271-1281). This method incorporates spatial data (e.g., latitude and longitude) to group populations such that the genetic difference among populations within groups is minimized while the genetic difference among population groups is maximized. The result is often groups of populations that are both geographically and genetically distinct. Our results revealed six population groups, of which three were relatively large in terms of population number and area. The largest group (group one, 25 populations) included coastal populations from Norton Sound, the lower Yukon River and most of the Kuskokwim River. Population groups two (8 populations) and four (10 populations) were also relatively large and occurred in the middle and upper Yukon River, respectively. The remaining three groups consisted of one or two isolated inland populations. This analysis suggests that hierarchical population structure occurs primarily along a latitudinal axis (east-west) which is dominated by the Yukon River, rather than the much shorter longitudinal axis (north-south) that defines the relative position of the three major watersheds (Norton Sound and the Yukon and Kuskokwim rivers). This spatial orientation (coastal - inland) was also observed in chum and coho salmon. The layer also contains collection site data including values from overlaying environmental layers and summary genetic data (principle component, mean Fst using the method of Foll and Gagiotti 2006 Genetics 174:875-891, mean heterozygosity) for Chinook salmon.
Purpose: To assess if the three major watersheds (Norton Sound and the Yukon and Kuskokwim rivers) are the primary determinant of hiearchical population structure for Chinook salmon and to assess if the patterns of hierarchical structure in Chinook, chum, and coho salmon are congruent.
Supplemental:
Publication Date: October 2009
Originator: USFWS, Conservation Genetics Laboratory, 1011 East Tudor Road, Anchorage, Alaska 99503
Online citation: \\KODIAK\I$\ProjectData\USFWS_CGL\CGL_LG_Data.mdb
Bounding coordinates:
West: -166.598972
East: -128.543802
North: 67.376555
South: 57.789373
Place Keywords: Yukon River, Kuskokwim River, Norton Sound, Alaska, Yukon
Theme Keywords: salmon, genetics, Chinook, Chum, Coho
Projection: NAD_1983_Alaska_Albers
Geographic: GCS_North_American_1983
Attributes of: Chinook_Sites
OBJECTID
Alias: OBJECTID
Data type: OID
Description: Internal feature number.
SHAPE
Alias: SHAPE
Data type: Geometry
Description: Feature geometry.
Site_ID
Alias: Site_ID
Data type: Integer
Site_Name
Alias: Site_Name
Data type: String
Waterbody_Name
Alias: Waterbody_Name
Data type: String
Site_Type
Alias: Site_Type
Data type: String
Lat_NAD83
Alias: Lat_NAD83
Data type: Double
Long_NAD83
Alias: Long_NAD83
Data type: Double
Chin_Pop_No
Alias: Chin_Pop_No
Data type: Double
Coho_Pop_No
Alias: Coho_Pop_No
Data type: Double
Chum_Pop_No
Alias: Chum_Pop_No
Data type: Double
Chin_PC1
Alias: Chin_PC1
Data type: Double
Chin_PC2
Alias: Chin_PC2
Data type: Double
Chin_PC3
Alias: Chin_PC3
Data type: Double
Chin_Fst
Alias: Chin_Fst
Data type: Double
Chin_He
Alias: Chin_He
Data type: Double
Chinook_PopGroup
Alias: Chinook_PopGroup
Data type: SmallInteger
Chin_yes_no
Alias: Chin_yes_no
Data type: String
Chum_yes_no
Alias: Chum_yes_no
Data type: String
Coho_yes_no
Alias: Coho_yes_no
Data type: String
Metadata date: 20090722

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